Installation | GitHub | Bioconductor (pending) | Modeling spatially resolved gene expression using tpSVG | Load Packages | Data processing | Modeling raw counts with Poisson model | Gaussian model for log-transformed normalized data | Covariate-adjusted Model | image-based SRT in SpatialExperiment (e.g. SpatialFeatureExperiment) | Session Info

Introduction | Installation | Input data format | Making escheR Plot | Load Packages | Preparing example data | Set up an escheR plot | Adding layers | Customize escheR Plot | Choosing Color Palette for add_fill and add_ground | Coninuous variable (gene expression) vs Categorical variable (Spatial Domains) | Categorical variable Vs Categorical variable | Guidance in choosing bivariate color palette | Adjusting aesthetics | Show a subset of levels | Multi-sample Figure | Save escheR plot | Session information

Visualized Dimensionality Reduced Embedding with SingleCellExperiment | SpatialExperiment inherits SingleCellExperiment | Hex Binning | Image-based SpatialExperiment Object | seqFISH | SlideSeqV2 | Beyond Bioconductor Eco-system | Session information